TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines

Dmitry Ershov; Minh-Son Phan; Joanna W Pylvänäinen; Stéphane U Rigaud; Laure Le Blanc; Arthur Charles-Orszag; James R W Conway; Romain F Laine; Nathan H Roy; Daria Bonazzi; Guillaume Duménil; Guillaume Jacquemet; Jean-Yves Tinevez

doi:10.1038/s41592-022-01507-1

TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines

Dmitry Ershov, Minh-Son Phan, Joanna W Pylvänäinen, Stéphane U Rigaud, Laure Le Blanc, Arthur Charles-Orszag, James R W Conway, Romain F Laine, Nathan H Roy, Daria Bonazzi, Guillaume Duménil, Guillaume Jacquemet, Jean-Yves Tinevez

Tutkimustuotos: Lehtiartikkeli › Artikkeli › Tieteellinen › vertaisarvioitu

75 Sitaatiot (Scopus)

16 Lataukset (Pure)

Abstrakti

TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms into tracking pipelines. We illustrate qualitatively and quantitatively that these new capabilities function effectively across a wide range of bio-imaging experiments.

Alkuperäiskieli	Englanti
Sivut	829-832
Julkaisu	Nature Methods
Vuosikerta	19
Numero	7
Varhainen verkossa julkaisun päivämäärä	2 kesäk. 2022
DOI - pysyväislinkit	https://doi.org/10.1038/s41592-022-01507-1
Tila	Julkaistu - heinäk. 2022
OKM-julkaisutyyppi	A1 Julkaistu artikkeli, soviteltu

Pääsy asiakirjaan

10.1038/s41592-022-01507-1

C. TrackMate paper revision - Maint textLisenssi: CC BY-ND

https://urn.fi/URN:NBN:fi-fe202301021020

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Viittausmuodot

Ershov, D., Phan, M-S., Pylvänäinen, J. W., Rigaud, S. U., Le Blanc, L., Charles-Orszag, A., Conway, J. R. W., Laine, R. F., Roy, N. H., Bonazzi, D., Duménil, G., Jacquemet, G., & Tinevez, J-Y. (2022). TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines. Nature Methods, 19(7), 829-832. Advance online publication. https://doi.org/10.1038/s41592-022-01507-1

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abstract = "TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms into tracking pipelines. We illustrate qualitatively and quantitatively that these new capabilities function effectively across a wide range of bio-imaging experiments.",

author = "Dmitry Ershov and Minh-Son Phan and Pylv{\"a}n{\"a}inen, {Joanna W} and Rigaud, {St{\'e}phane U} and {Le Blanc}, Laure and Arthur Charles-Orszag and Conway, {James R W} and Laine, {Romain F} and Roy, {Nathan H} and Daria Bonazzi and Guillaume Dum{\'e}nil and Guillaume Jacquemet and Jean-Yves Tinevez",

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year = "2022",

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doi = "10.1038/s41592-022-01507-1",

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AU - Ershov, Dmitry

AU - Phan, Minh-Son

AU - Pylvänäinen, Joanna W

AU - Rigaud, Stéphane U

AU - Le Blanc, Laure

AU - Charles-Orszag, Arthur

AU - Conway, James R W

AU - Laine, Romain F

AU - Roy, Nathan H

AU - Bonazzi, Daria

AU - Duménil, Guillaume

AU - Jacquemet, Guillaume

AU - Tinevez, Jean-Yves

PY - 2022/7

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N2 - TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms into tracking pipelines. We illustrate qualitatively and quantitatively that these new capabilities function effectively across a wide range of bio-imaging experiments.

AB - TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms into tracking pipelines. We illustrate qualitatively and quantitatively that these new capabilities function effectively across a wide range of bio-imaging experiments.

UR - https://www.biorxiv.org/content/10.1101/2021.09.03.458852v2

U2 - 10.1038/s41592-022-01507-1

DO - 10.1038/s41592-022-01507-1

M3 - Article

C2 - 35654950

SN - 1548-7091

VL - 19

SP - 829

EP - 832

JO - Nature Methods

JF - Nature Methods

IS - 7

ER -

TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines

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