Quantitative PCR detection and improved sample preparation of microcystin-producing Anabaena, Microcystis and Planktothrix

Henna Hautala*, Urpo Lamminmäki, Lisa Spoof, Sonja Nybom, Jussi Meriluoto, Markus Vehniäinen

*Tämän työn vastaava kirjoittaja

Tutkimustuotos: LehtiartikkeliArtikkeliTieteellinenvertaisarvioitu

24 Sitaatiot (Scopus)

Abstrakti

Blooms of toxic cyanobacteria, associated with illness and mortality in humans and animals, are becoming increasingly common worldwide. The safe use of surface waters for drinking water production and recreation necessitates assessment of toxigenic cyanobacteria. We have developed simple and reliable sample preparation and qPCR methods to detect microcystin-producing strains of three major bloom-forming genera, Anabaena, Microcystis and Planktothrix. The mcyB second thiolation motif, previously not recognized as a potential target for qPCR, was used as a basis for primer and genus-specific probe design. Assay specificity and sensitivity was confirmed with cultured cyanobacterial strains and the effect of different sample preparation methods on quantification was investigated. Sample filtration and cell lysis reduced assay time and resulted in more efficient amplification compared to DNA extraction. Positive correlation (p<0.005) between mcyB copy numbers and microcystin concentrations was observed in environmental samples. The results encourage the use of qPCR in water risk management.

AlkuperäiskieliEnglanti
Sivut49-56
Sivumäärä8
JulkaisuEcotoxicology and Environmental Safety
Vuosikerta87
DOI - pysyväislinkit
TilaJulkaistu - 1 tammikuuta 2013
OKM-julkaisutyyppiA1 Julkaistu artikkeli, soviteltu

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