Gallionella and Sulfuricella populations are dominant during the transition of boreal potential to actual acid sulfate soils

Eva Högfors-Rönnholm; Daniel Lundin; Diego Brambilla; Stephan Christel; Margarita Lopez-Fernandez; Tom Lillhonga; Sten Engblom; Peter Österholm; Mark Dopson

doi:10.1038/s43247-022-00642-z

Gallionella and Sulfuricella populations are dominant during the transition of boreal potential to actual acid sulfate soils

Eva Högfors-Rönnholm^*
, Daniel Lundin
, Diego Brambilla
, Stephan Christel
, Margarita Lopez-Fernandez
, Tom Lillhonga
, Sten Engblom
, Peter Österholm
, Mark Dopson

^*Tämän työn vastaava kirjoittaja

Tutkimustuotos: Lehtiartikkeli › Artikkeli › Tieteellinen › vertaisarvioitu

18 Sitaatiot (Scopus)

58 Lataukset (Pure)

Abstrakti

Acid sulfate soils release metal laden, acidic waters that affect the environment, buildings, and human health. In this study, 16S rRNA gene amplicons, metagenomes, and metatranscriptomes all demonstrated distinct microbial communities and activities in the unoxidized potential acid sulfate soil, the overlying transition zone, and uppermost oxidized actual acid sulfate soil. Assembled genomes and mRNA transcripts also suggested abundant oxidized acid sulfate soil populations that aligned within the Gammaproteobacteria and Terracidiphilus. In contrast, potentially acid tolerant or moderately acidophilic iron oxidizing Gallionella and sulfur metabolizing Sulfuricella dominated the transition zone during catalysis of metal sulfide oxidation to form acid sulfate soil. Finally, anaerobic oxidation of methane coupled to nitrate, sulfate, and ferric reduction were suggested to occur in the reduced parent sediments. In conclusion, despite comparable metal sulfide dissolution processes e.g., biomining, Gallionella and Sulfuricella dominated the community and activities during conversion of potential to actual acid sulfate soils.

Alkuperäiskieli	Englanti
Artikkeli	304
Julkaisu	Communications Earth and Environment
Vuosikerta	3
Numero	1
DOI - pysyväislinkit	https://doi.org/10.1038/s43247-022-00642-z
Tila	Julkaistu - jouluk. 2022
OKM-julkaisutyyppi	A1 Julkaistu artikkeli, soviteltu

Rahoitus

A portion of this research was performed under the Facilities Integrating Collaborations for User Science (FICUS) initiative and used resources at the DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory, which are DOE Office of Science User Facilities. Both facilities are sponsored by the Office of Biological and Environmental Research and operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL). E.H.-R. acknowledges the Nessling Foundation (grant number 201700273 and 201800502) and Svensk-Österbottniska Samfundet r.f. (grant number 18/0604) for financial support. E.H.-R. and S.E. further acknowledge the financial support by the European Regional Development Fund via the Interreg Botnia-Atlantica program to the project “Sustainable treatment of coastal deposited sulfide soils (STASIS).” M.D. acknowledges The Swedish Research Council Formas (grant number 2018-00760) and the Geological Survey of Sweden (grant number 36-1878/2017) for financial support. M.D further acknowledges the Science for Life Laboratory (SciLifeLab) and the National Genomics Infrastructure (NGI). The computations were enabled by resources (SNIC 2021/22-628) provided by the Swedish National Infrastructure for Computing (SNIC) at UPPMAX at Uppsala University partially funded by the Swedish Research Council through grant agreement no. 2018-05973. D.L. and D.B. acknowledges the Swedish Research Council infrastructure project Biodiversity Atlas Sweden (VR, grant number 2017-00688) and the marine strategic research environment EcoChange (Formas) for financial support. Jussi Hyvönen is gratefully acknowledged for geochemical analyses. A portion of this research was performed under the Facilities Integrating Collaborations for User Science (FICUS) initiative and used resources at the DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory, which are DOE Office of Science User Facilities. Both facilities are sponsored by the Office of Biological and Environmental Research and operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL). E.H.-R. acknowledges the Nessling Foundation (grant number 201700273 and 201800502) and Svensk-Österbottniska Samfundet r.f. (grant number 18/0604) for financial support. E.H.-R. and S.E. further acknowledge the financial support by the European Regional Development Fund via the Interreg Botnia-Atlantica program to the project “Sustainable treatment of coastal deposited sulfide soils (STASIS).” M.D. acknowledges The Swedish Research Council Formas (grant number 2018-00760) and the Geological Survey of Sweden (grant number 36-1878/2017) for financial support. M.D further acknowledges the Science for Life Laboratory (SciLifeLab) and the National Genomics Infrastructure (NGI). The computations were enabled by resources (SNIC 2021/22-628) provided by the Swedish National Infrastructure for Computing (SNIC) at UPPMAX at Uppsala University partially funded by the Swedish Research Council through grant agreement no. 2018-05973. D.L. and D.B. acknowledges the Swedish Research Council infrastructure project Biodiversity Atlas Sweden (VR, grant number 2017-00688) and the marine strategic research environment EcoChange (Formas) for financial support. Jussi Hyvönen is gratefully acknowledged for geochemical analyses.

Pääsy asiakirjaan

10.1038/s43247-022-00642-z

Gallionella and SulfuricellaLopullinen julkaistu versio, 4,38 MB

https://urn.fi/URN:NBN:fi-fe2023020926414

Muut tiedostot ja linkit

Linkki julkaisuun Scopuksessa

Viittausmuodot

Högfors-Rönnholm, E., Lundin, D., Brambilla, D., Christel, S., Lopez-Fernandez, M., Lillhonga, T., Engblom, S., Österholm, P., & Dopson, M. (2022). Gallionella and Sulfuricella populations are dominant during the transition of boreal potential to actual acid sulfate soils. Communications Earth and Environment, 3(1), Artikkeli 304. https://doi.org/10.1038/s43247-022-00642-z

@article{f576533149294991884ed36e600706eb,

title = "Gallionella and Sulfuricella populations are dominant during the transition of boreal potential to actual acid sulfate soils",

abstract = "Acid sulfate soils release metal laden, acidic waters that affect the environment, buildings, and human health. In this study, 16S rRNA gene amplicons, metagenomes, and metatranscriptomes all demonstrated distinct microbial communities and activities in the unoxidized potential acid sulfate soil, the overlying transition zone, and uppermost oxidized actual acid sulfate soil. Assembled genomes and mRNA transcripts also suggested abundant oxidized acid sulfate soil populations that aligned within the Gammaproteobacteria and Terracidiphilus. In contrast, potentially acid tolerant or moderately acidophilic iron oxidizing Gallionella and sulfur metabolizing Sulfuricella dominated the transition zone during catalysis of metal sulfide oxidation to form acid sulfate soil. Finally, anaerobic oxidation of methane coupled to nitrate, sulfate, and ferric reduction were suggested to occur in the reduced parent sediments. In conclusion, despite comparable metal sulfide dissolution processes e.g., biomining, Gallionella and Sulfuricella dominated the community and activities during conversion of potential to actual acid sulfate soils.",

author = "Eva H{\"o}gfors-R{\"o}nnholm and Daniel Lundin and Diego Brambilla and Stephan Christel and Margarita Lopez-Fernandez and Tom Lillhonga and Sten Engblom and Peter {\"O}sterholm and Mark Dopson",

note = "Publisher Copyright: {\textcopyright} 2022, The Author(s).",

year = "2022",

month = dec,

doi = "10.1038/s43247-022-00642-z",

language = "English",

volume = "3",

journal = "Communications Earth and Environment",

issn = "2662-4435",

publisher = "Nature Research",

number = "1",

}

Högfors-Rönnholm, E, Lundin, D, Brambilla, D, Christel, S, Lopez-Fernandez, M, Lillhonga, T, Engblom, S, Österholm, P & Dopson, M 2022, 'Gallionella and Sulfuricella populations are dominant during the transition of boreal potential to actual acid sulfate soils', Communications Earth and Environment, Vuosikerta 3, Nro 1, 304. https://doi.org/10.1038/s43247-022-00642-z

TY - JOUR

T1 - Gallionella and Sulfuricella populations are dominant during the transition of boreal potential to actual acid sulfate soils

AU - Högfors-Rönnholm, Eva

AU - Lundin, Daniel

AU - Brambilla, Diego

AU - Christel, Stephan

AU - Lopez-Fernandez, Margarita

AU - Lillhonga, Tom

AU - Engblom, Sten

AU - Österholm, Peter

AU - Dopson, Mark

PY - 2022/12

Y1 - 2022/12

N2 - Acid sulfate soils release metal laden, acidic waters that affect the environment, buildings, and human health. In this study, 16S rRNA gene amplicons, metagenomes, and metatranscriptomes all demonstrated distinct microbial communities and activities in the unoxidized potential acid sulfate soil, the overlying transition zone, and uppermost oxidized actual acid sulfate soil. Assembled genomes and mRNA transcripts also suggested abundant oxidized acid sulfate soil populations that aligned within the Gammaproteobacteria and Terracidiphilus. In contrast, potentially acid tolerant or moderately acidophilic iron oxidizing Gallionella and sulfur metabolizing Sulfuricella dominated the transition zone during catalysis of metal sulfide oxidation to form acid sulfate soil. Finally, anaerobic oxidation of methane coupled to nitrate, sulfate, and ferric reduction were suggested to occur in the reduced parent sediments. In conclusion, despite comparable metal sulfide dissolution processes e.g., biomining, Gallionella and Sulfuricella dominated the community and activities during conversion of potential to actual acid sulfate soils.

AB - Acid sulfate soils release metal laden, acidic waters that affect the environment, buildings, and human health. In this study, 16S rRNA gene amplicons, metagenomes, and metatranscriptomes all demonstrated distinct microbial communities and activities in the unoxidized potential acid sulfate soil, the overlying transition zone, and uppermost oxidized actual acid sulfate soil. Assembled genomes and mRNA transcripts also suggested abundant oxidized acid sulfate soil populations that aligned within the Gammaproteobacteria and Terracidiphilus. In contrast, potentially acid tolerant or moderately acidophilic iron oxidizing Gallionella and sulfur metabolizing Sulfuricella dominated the transition zone during catalysis of metal sulfide oxidation to form acid sulfate soil. Finally, anaerobic oxidation of methane coupled to nitrate, sulfate, and ferric reduction were suggested to occur in the reduced parent sediments. In conclusion, despite comparable metal sulfide dissolution processes e.g., biomining, Gallionella and Sulfuricella dominated the community and activities during conversion of potential to actual acid sulfate soils.

UR - https://www.scopus.com/pages/publications/85143371102

U2 - 10.1038/s43247-022-00642-z

DO - 10.1038/s43247-022-00642-z

M3 - Article

AN - SCOPUS:85143371102

SN - 2662-4435

VL - 3

JO - Communications Earth and Environment

JF - Communications Earth and Environment

IS - 1

M1 - 304

ER -

Gallionella and Sulfuricella populations are dominant during the transition of boreal potential to actual acid sulfate soils

Abstrakti

Rahoitus

Pääsy asiakirjaan

Muut tiedostot ja linkit

Sormenjälki

Viittausmuodot