TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines

Dmitry Ershov, Minh-Son Phan, Joanna W Pylvänäinen, Stéphane U Rigaud, Laure Le Blanc, Arthur Charles-Orszag, James R W Conway, Romain F Laine, Nathan H Roy, Daria Bonazzi, Guillaume Duménil, Guillaume Jacquemet, Jean-Yves Tinevez

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)

Abstract

TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to address the broad spectrum of modern challenges researchers face by integrating state-of-the-art segmentation algorithms into tracking pipelines. We illustrate qualitatively and quantitatively that these new capabilities function effectively across a wide range of bio-imaging experiments.

Original languageEnglish
Pages (from-to)829-832
JournalNature Methods
Volume19
Issue number7
Early online date2 Jun 2022
DOIs
Publication statusPublished - Jul 2022
MoE publication typeA1 Journal article-refereed

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