BODIL: a molecular modeling environment for structure-function analysis and drug design

Jukka Lehtonen, Dan-Johan Still, Ville-V Rantanen, Jan Ekholm, Dag Björklund, Zuhair Iftikhar, Mikko Huhtala, Susanna Repo, Antti Jussila, Jussi Jaakkola, Olli Pentikäinen, Tommi Nyrönen, Tiina Salminen, Mats Gyllenberg, Mark S Johnson

    Research output: Contribution to journalArticleScientificpeer-review

    192 Citations (Scopus)

    Abstract

    BODIL is a molecular modeling environment geared to help the user to quickly identify key features of proteins critical to molecular recognition, especially (1) in drug discovery applications, and (2) to understand the structural basis for function. The program incorporates state-of-the-art graphics, sequence and structural alignment methods, among other capabilities needed in modern structure-function-drug target research. BODIL has a flexible design that allows on-the-fly incorporation of new modules, has intelligent memory management, and fast multi-view graphics. A beta version of BODIL and an accompanying tutorial are available at http://www.abo.fi/fak/mnf/bkf/research/johnson/bodil.html.
    Original languageUndefined/Unknown
    Pages (from-to)401–419
    JournalJournal of Computer-Aided Molecular Design
    Volume18
    Issue number6
    DOIs
    Publication statusPublished - 2004
    MoE publication typeA1 Journal article-refereed

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