BODIL: a molecular modeling environment for structure-function analysis and drug design

Jukka Lehtonen; Dan-Johan Still; Ville-V Rantanen; Jan Ekholm; Dag Björklund; Zuhair Iftikhar; Mikko Huhtala; Susanna Repo; Antti Jussila; Jussi Jaakkola; Olli Pentikäinen; Tommi Nyrönen; Tiina Salminen; Mats Gyllenberg; Mark S Johnson

doi:10.1007/s10822-004-3752-4

BODIL: a molecular modeling environment for structure-function analysis and drug design

Jukka Lehtonen, Dan-Johan Still, Ville-V Rantanen, Jan Ekholm, Dag Björklund, Zuhair Iftikhar, Mikko Huhtala, Susanna Repo, Antti Jussila, Jussi Jaakkola, Olli Pentikäinen, Tommi Nyrönen, Tiina Salminen, Mats Gyllenberg, Mark S Johnson

Research output: Contribution to journal › Article › Scientific › peer-review

194 Citations (Scopus)

Abstract

BODIL is a molecular modeling environment geared to help the user to quickly identify key features of proteins critical to molecular recognition, especially (1) in drug discovery applications, and (2) to understand the structural basis for function. The program incorporates state-of-the-art graphics, sequence and structural alignment methods, among other capabilities needed in modern structure-function-drug target research. BODIL has a flexible design that allows on-the-fly incorporation of new modules, has intelligent memory management, and fast multi-view graphics. A beta version of BODIL and an accompanying tutorial are available at http://www.abo.fi/fak/mnf/bkf/research/johnson/bodil.html.

Original language	Undefined/Unknown
Pages (from-to)	401–419
Journal	Journal of Computer-Aided Molecular Design
Volume	18
Issue number	6
DOIs	https://doi.org/10.1007/s10822-004-3752-4
Publication status	Published - 2004
MoE publication type	A1 Journal article-refereed

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10.1007/s10822-004-3752-4

Cite this

Lehtonen, J., Still, D.-J., Rantanen, V.-V., Ekholm, J., Björklund, D., Iftikhar, Z., Huhtala, M., Repo, S., Jussila, A., Jaakkola, J., Pentikäinen, O., Nyrönen, T., Salminen, T., Gyllenberg, M., & Johnson, M. S. (2004). BODIL: a molecular modeling environment for structure-function analysis and drug design. Journal of Computer-Aided Molecular Design, 18(6), 401–419. https://doi.org/10.1007/s10822-004-3752-4

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title = "BODIL: a molecular modeling environment for structure-function analysis and drug design",

abstract = "BODIL is a molecular modeling environment geared to help the user to quickly identify key features of proteins critical to molecular recognition, especially (1) in drug discovery applications, and (2) to understand the structural basis for function. The program incorporates state-of-the-art graphics, sequence and structural alignment methods, among other capabilities needed in modern structure-function-drug target research. BODIL has a flexible design that allows on-the-fly incorporation of new modules, has intelligent memory management, and fast multi-view graphics. A beta version of BODIL and an accompanying tutorial are available at http://www.abo.fi/fak/mnf/bkf/research/johnson/bodil.html.",

author = "Jukka Lehtonen and Dan-Johan Still and Ville-V Rantanen and Jan Ekholm and Dag Bj{\"o}rklund and Zuhair Iftikhar and Mikko Huhtala and Susanna Repo and Antti Jussila and Jussi Jaakkola and Olli Pentik{\"a}inen and Tommi Nyr{\"o}nen and Tiina Salminen and Mats Gyllenberg and Johnson, {Mark S}",

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Lehtonen, J, Still, D-J, Rantanen, V-V, Ekholm, J, Björklund, D, Iftikhar, Z, Huhtala, M, Repo, S, Jussila, A, Jaakkola, J, Pentikäinen, O, Nyrönen, T, Salminen, T, Gyllenberg, M & Johnson, MS 2004, 'BODIL: a molecular modeling environment for structure-function analysis and drug design', Journal of Computer-Aided Molecular Design, vol. 18, no. 6, pp. 401–419. https://doi.org/10.1007/s10822-004-3752-4

TY - JOUR

T1 - BODIL: a molecular modeling environment for structure-function analysis and drug design

AU - Lehtonen, Jukka

AU - Still, Dan-Johan

AU - Rantanen, Ville-V

AU - Ekholm, Jan

AU - Björklund, Dag

AU - Iftikhar, Zuhair

AU - Huhtala, Mikko

AU - Repo, Susanna

AU - Jussila, Antti

AU - Jaakkola, Jussi

AU - Pentikäinen, Olli

AU - Nyrönen, Tommi

AU - Salminen, Tiina

AU - Gyllenberg, Mats

AU - Johnson, Mark S

PY - 2004

Y1 - 2004

N2 - BODIL is a molecular modeling environment geared to help the user to quickly identify key features of proteins critical to molecular recognition, especially (1) in drug discovery applications, and (2) to understand the structural basis for function. The program incorporates state-of-the-art graphics, sequence and structural alignment methods, among other capabilities needed in modern structure-function-drug target research. BODIL has a flexible design that allows on-the-fly incorporation of new modules, has intelligent memory management, and fast multi-view graphics. A beta version of BODIL and an accompanying tutorial are available at http://www.abo.fi/fak/mnf/bkf/research/johnson/bodil.html.

AB - BODIL is a molecular modeling environment geared to help the user to quickly identify key features of proteins critical to molecular recognition, especially (1) in drug discovery applications, and (2) to understand the structural basis for function. The program incorporates state-of-the-art graphics, sequence and structural alignment methods, among other capabilities needed in modern structure-function-drug target research. BODIL has a flexible design that allows on-the-fly incorporation of new modules, has intelligent memory management, and fast multi-view graphics. A beta version of BODIL and an accompanying tutorial are available at http://www.abo.fi/fak/mnf/bkf/research/johnson/bodil.html.

U2 - 10.1007/s10822-004-3752-4

DO - 10.1007/s10822-004-3752-4

M3 - Artikel

SN - 0920-654X

VL - 18

SP - 401

EP - 419

JO - Journal of Computer-Aided Molecular Design

JF - Journal of Computer-Aided Molecular Design

IS - 6

ER -