A simple mass-action model for the eukaryotic heat shock response and its mathematical validation

A1 Journal article (refereed)


Internal Authors/Editors


Publication Details

List of Authors: Petre I, Mizera A, Hyder CL, Meinander A, Mikhailov A, Morimoto RI, Sistonen L, Eriksson JE, Back RJ
Publisher: SPRINGER
Publication year: 2011
Journal: Natural Computing
Journal acronym: NAT COMPUT
Volume number: 10
Issue number: 1
Start page: 595
End page: 612
Number of pages: 18
ISSN: 1567-7818
eISSN: 1572-9796


Abstract

The heat shock response is a primordial defense mechanism against cell stress and protein misfolding. It proceeds with the minimum number of mechanisms that any regulatory network must include, a stress-induced activation and a feedback regulation, and can thus be regarded as the archetype for a cellular regulatory process. We propose here a simple mechanistic model for the eukaryotic heat shock response, including its mathematical validation. Based on numerical predictions of the model and on its sensitivity analysis, we minimize the model by identifying the reactions with marginal contribution to the heat shock response. As the heat shock response is a very basic and conserved regulatory network, our analysis of the network provides a useful foundation for modeling strategies of more complex cellular processes.


Keywords

Heat shock element, Heat shock factor, Heat shock protein, Heat shock response, Mathematical model, Regulatory network

Last updated on 2019-06-12 at 04:36