Peer-reviewed publications

A1 Journal article (refereed)
NetControl4BioMed: A pipeline for biomedical data acquisition and analysis of network controllability (2018)
Krishna Kanhaiya, Vladimir Rogojin, Keivan Kazemi, Eugen Czeizler, Ion Petre
BMC Bioinformatics
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A3 Book section, Chapters in research books
WEBRSIM: A Web-Based Reaction Systems Simulator (2018)
Sergiu Ivanov, Vladimir Rogojin, Sepinoud Azimi, Ion Petre
Springer
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A4 Conference proceedings
Generating the logicome from microarray data (2017)
Charmi Panchal, Vladimir Rogojin
IEEE
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A4 Conference proceedings
Automatic discovery of combined drug therapy (2016)
Vladimir Rogojin, Keivan Kazemi, Krishna Kanhaiya, Eugen Czeizler, Ion Petre
A1 Journal article (refereed)
Computational completeness of complete, star-like, and linear hybrid networks of evolutionary processors with a small number of processors (2016)
Artiom Alhazov, Rudolf Freund, Vladimir Rogozhin, Yurii Rogozhin
Natural Computing
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A1 Journal article (refereed)
Large-scale executable biology using rapid integration of computational models: ee (2016)
Vladimir Rogojin, Ion Petre
Computer Science Journal of Moldova
A4 Conference proceedings
An excursion through quantitative model refinement (2015)
Sepinoud Azimi, Eugen Czeizler, Cristian Gratie, Diana Gratie, Bogdan Iancu, Nebiat Ibssa, Ion Petre, Vladimir Rogojin, Tolou Shadbahr, Fatemeh Shokri
Springer
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A1 Journal article (refereed)
Early Maternal Alcohol Consumption Alters Hippocampal DNA Methylation, Gene Expression and Volume in a Mouse Model (2015)
Heidi Marjonen, Alejandra Sierra, Anna Nyman, Vladimir Rogojin, Olli Grohn, Anni-Maija Linden, Sampsa Hautaniemi, Nina Kaminen-Ahola
PLoS ONE
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A1 Journal article (refereed)
The Structure of Elementary Strategies for Gene Assembly in Ciliates (2015)
Vladimir Rogojin, Ion Petre
Fundamenta Informaticae
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A1 Journal article (refereed)
Dependency relations between elementary intramolecular operations in gene assembly in ciliates (2014)
Petre Ion, Rogojin Vladimir
Journal of Automata, Languages and Combinatorics
A1 Journal article (refereed)
On combinatorial properties of elementary intramolecular operations (2014)
Rogojin Vladimir
Computer Science Journal of Moldova
A1 Journal article (refereed)
Identification of Genetic Markers with Synergistic Survival Effect in Cancer (2013)
Riku Louhimo, Marko Laakso, Tuomas Heikkinen, Susanna Laitinen, Pekka Manninen, Vladimir Rogojin, Minna Miettinen, Carl Blomqvist, Jianjun Liu, Heli Nevanlinna, Sampsa Hautaniemi
BMC Systems Biology
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A1 Journal article (refereed)
The Phosphorylation of the Heat Shock Factor as a Modulator for the Heat Shock Response (2012)
Eugen Czeizler, Vladimir Rogojin, Ion Petre
IEEE/ACM Transactions on Computational Biology and Bioinformatics
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A1 Journal article (refereed)
Directed Overlap-Inclusion Graphs as Representations of Ciliate Genes (2011)
Sepinoud Azimi, Tero Harju, Miika Langille, Ion Petre, Vladimir Rogojin
Fundamenta Informaticae
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A4 Conference proceedings
The Phosphorylation of the Heat Shock Factor as a Modulator for the Heat Shock Response (2011)
Eugen Czeizler, Vladimir Rogojin, Ion Petre
ACM
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A1 Journal article (refereed)
Accepting Splicing Systems (2010)
Victor Mitrana, Ion Petre, Vladimir Rogojin
Theoretical Computer Science
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A1 Journal article (refereed)
Three Models for Gene Assembly in Ciliates: A Comparison (2010)
Miika Langille, Ion Petre, Vladimir Rogojin
Computer Science Journal of Moldova
A1 Journal article (refereed)
Successful Elementary Gene Assembly Strategies (2009)
Vladimir Rogojin
International Journal of Foundations of Computer Science
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A1 Journal article (refereed)
The Parallel Complexity of Signed Graphs: Decidability and an Improved Algorithm (2009)
Artiom Alhazov, Ion Petre, Vladimir Rogojin
Theoretical Computer Science
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A4 Conference proceedings
Three Models for Gene Assembly in Ciliates: A Comparison (2009)
Miika Langille, Ion Petre, Vladimir Rogojin
The Institute for Computer Sciences, Social Informatics and Telecommunications Engineering (ICST)
A1 Journal article (refereed)
Decision Problems for Shuffled Genes (2008)
Petre I, Rogojin V
Information and Computation
A1 Journal article (refereed)
Patterns of Simple Gene Assembly (2008)
Harju T, Petre I, Rogojin V, Rozenberg G
Discrete Applied Mathematics
A1 Journal article (refereed)
Solutions to Computational Problems Through Gene Assembly (2008)
Alhazov A, Petre I, Rogojin V
Natural Computing
A4 Conference proceedings
Solutions to Computational Problems Through Gene Assembly (2008)
Alhazov A, Petre I, Rogojin V
Springer
A1 Journal article (refereed)
Computational Power of Intramolecular Gene Assembly (2007)
Tseren-Onolt Ishdorj, Ion Petre, Vladimir Rogojin
International Journal of Foundations of Computer Science
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Other publications

D4 Published development or research report or study
Generating the Logicome from Microarray Data (2017)
Charmi Panchal, Vladimir Rogojin
D4 Published development or research report or study
NetControl4BioMed: A pipeline for biomedical data acquisition and analysis of network controllability (2016)
Krishna Kanhaiya, Vladimir Rogojin, Keivan Kazemi, Eugen Czeizler, Ion Petre
D4 Published development or research report or study
NetControl4BioMed – Automated discovery of combined drug therapy (2016)
Vladimir Rogojin, Keivan Kazemi, Krishna Kanhaiya, Eugen Czeizler, Ion Petre
D4 Published development or research report or study
An Excursion Through Quantitative Model Refinement (2015)
Sepinoud Azimi, Eugen Czeizler, Cristian Gratie, Diana Gratie, Bogdan Iancu, Nebiat Ibssa, Ion Petre, Vladimir Rogojin, Tolou Shadbahr, Fatemeh Shokri

Last updated on 2018-19-09 at 19:40