Mark S Johnson

Professor, Biochemistry
Email: mark.s.johnson@abo.fi
Mobile: +358-404821642
Phone: +358-2-2154014


Peer-reviewed publications

A1 Journal article (refereed)
Distinctive structural motifs co-ordinate the catalytic nucleophile and the residues of the oxyanion hole in the alpha/beta-hydrolase fold enzymes. (2019)
Dimitriou PS, Denesyuk AI, Nakayama T, Johnson MS, Denessiouk K.
Protein Science
ACS Chemical Biology
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A1 Journal article (refereed)
Phylogenetic and mutational analyses of human LEUTX, a homeobox gene implicated in embryogenesis (2018)
Katayama Shintaro, Ranga Vipin, Jouhilahti Eeva-Mari, Airenne Tomi T., Johnson Mark S., Mukherjee Krishanu, Bürglin Thomas R., Kere Juha
Scientific Reports
PLoS ONE
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A1 Journal article (refereed)
Top surface blade residues and the central channel water molecules are conserved in every repeat of the integrin-like β-propeller structures. (2018)
Denesyuk A, Denessiouk K, Johnson MS.
Journal of Structural Biology
FASEB Journal
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A1 Journal article (refereed)
Alpha/beta-hydrolases: A unique structural motif coordinates catalytic acid residue in 40 protein fold families (2017)
Polytimi S. Dimitriou, Alexander Denesyuk, Seiji Takahashi, Satoshi Yamashita, Mark S. Johnson, Toru Nakayama, Konstantin Denessiouk
Proteins
PLoS ONE
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A1 Journal article (refereed)
Building kit for metal cation binding sites in proteins. (2017)
Denesyuk AI, Permyakov SE, Johnson MS, Permyakov EA, Denessiouk K.
Biochemical and Biophysical Research Communications
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A1 Journal article (refereed)
In silico identification of milk antihypertensive di- and tripeptides involved in Angiotensin I-Converting Enzyme inhibitory activity (2017)
Vladimir R. Vukic, Dajana V. Vukic, Spasenija D. Milanovic, Mirela D. Ilicic, Katarina G. Kanuric, Mark S. Johnson
Nutrition Research
PLoS ONE
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A1 Journal article (refereed)
Joint inflammation related citrullination of functional arginines in extracellular proteins (2017)
Sipilä Kalle H., Ranga Vipin, Rappu Pekka, Mali Markku, Pirilä Laura, Heino Ilona, Jokinen Johanna, Käpylä Jarmo, Johnson Mark S., Heino Jyrki
Scientific Reports
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A1 Journal article (refereed)
Novel calcium recognition constructions in proteins: Calcium blade and EF-hand zone (2017)
Alexander I. Denesyuk, Sergei E. Permyakov, Mark S. Johnson, Eugene A. Permyakov, Konstantin Denessiouk
Biochemical and Biophysical Research Communications
A1 Journal article (refereed)
Structural characterization of core-bradavidin in complex with biotin (2017)
Agrawal N, Määttä JAE, Kulomaa MS, Hytönen VP, Johnson MS, Airenne TT
PLoS ONE
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A1 Journal article (refereed)
SUMOylation regulates nuclear accumulation and signaling activity of the soluble intracellular domain of the ErbB4 receptor tyrosine kinase (2017)
Anna M. Knittle, Maria Helkkula, Mark S. Johnson, Maria Sundvall, Klaus Elenius
Journal of Biological Chemistry
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A2 Review article, Literature review, Systematic review
Tailored approaches in drug development and diagnostics: from molecular design to biological model systems (2017)
Cecilia Sahlgren, Annika Meinander, Hongbo Zhang, Fang Cheng, Maren Preis, Chunlin Xu, Tiina A. Salminen, Diana Toivola, Daniel Abankwa, Ari Rosling, Didem Şen Karaman, Outi M. H. Salo-Ahen, Ronald Österbacka, John E. Eriksson, Stefan Willför, Ion Petre, Jouko Peltonen, Reko Leino, Mark Johnson, Jessica Rosenholm, Niklas Sandler
Advanced Healthcare Materials
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A1 Journal article (refereed)
Extracellular citrullination inhibits the function of matrix associated TGF-β (2016)
Kalle H. Sipilä, Vipin Ranga, Pekka Rappu, Annamari Torittu, Laura Pirilä, Jarmo Käpylä, Mark S. Johnson, Hannu Larjava, Jyrki Heino
Matrix Biology
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A1 Journal article (refereed)
Plasma Protein Binding of Anisomelic Acid: Spectroscopy and Molecular Dynamic Simulations (2016)
Rajendran Senthilkumar, Parthiban Marimuthu, Preethy Paul, Yesaiyan Manojkumar, Sankaralingam Arunachalam, John E Eriksson, Mark S. Johnson
Journal of Chemical Information and Modeling
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A1 Journal article (refereed)
Activating ERBB4 mutations in non-small cell lung cancer (2015)
Kurppa KJ, Denessiouk K, Johnson MS, Elenius K.
Oncogene
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A1 Journal article (refereed)
Artificial Avidin-Based Receptors for a Panel of Small Molecules (2015)
Soili I. Lehtonen, Antti Tullila, Nitin Agrawal, Sampo Kukkurainen, Niklas Kähkönen, Masi Koskinen, Tarja K. Nevanen, Mark S. Johnson, Tomi T. Airenne, Markku S. Kulomaa, Tiina A. Riihimäki, Vesa P. Hytönen
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A1 Journal article (refereed)
A Novel Chimeric Avidin with Increased Thermal Stability Using DNA Shuffling (2014)
Barbara Taskinen, Tomi T. Airenne, Janne Jänis, Rolle Rahikainen, Mark S. Johnson, Markku S. Kulomaa, Vesa P. Hytönen
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A1 Journal article (refereed)
Citrullination of collagen II affects integrin-mediated cell adhesion in a receptor-specific manner (2014)
Sipilä K, Haag S, Denessiouk K, Käpylä J, Peters EC, Denesyuk A, Hansen U, Konttinen Y, Johnson MS, Holmdahl R, Heino J
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A1 Journal article (refereed)
Early Chordate Origin of the Vertebrate Integrin aI Domains (2014)
Chouhan BC, Käpylä J, Denessiouk K, Denesyuk A, Heino J, Johnson MS
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A3 Book section, Chapters in research books
Evolution of Integrin I Domains (2014)
Mark S. Johnson, Bhanupratap Singh Chouhan
Springer
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A1 Journal article (refereed)
Two Structural Motifs within Canonical EF-Hand Calcium- Binding Domains Identify Five Different Classes of Calcium Buffers and Sensors (2014)
Konstantin Denessiouk, Sergei Permyakov, Alexander Denesyuk, Eugene Permyakov, Mark S. Johnson
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A1 Journal article (refereed)
Zebavidin- an avidin-like protein from Zebrafish (2013)
Barbara Taskinen, Joanna Zmurko, Markus Ojanen, Sampo Kukkurainen, Marimuthu Parthiban, Juha A. E. Määttä, Jenni Leppiniemi, Janne Jänis, Mataleena Parikka, Hannu Turpeinen, Mika Rämet, Marko Pesu, Mark S. Johnson, Markku S. Kulomaa, Tomi T. Airenne, Vesa P. Hytönen
PLoS ONE
A1 Journal article (refereed)
Active site opening and closure control translocation of multisubunit RNA polymerase (2012)
Malinen AM, Turtola M, Parthiban M, Vainonen L, Johnson MS, Belogurov GA
Nucleic Acids Research
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A1 Journal article (refereed)
Novel Vascular Endothelial Growth Factor D Variants with Increased Biological Activity (2009)
Toivanen PI, Nieminen T, Viitanen L, Alitalo A, Roschier M, Jauhiainen S, Markkanen JE, Laitinen OH, Airenne TT, Salminen TA, Johnson MS, Airenne KJ, Ylä-Herttuala S
Journal of Biological Chemistry
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A1 Journal article (refereed)
Effects of conformational activation of integrin alpha 1I and alpha 2I domains on selective recognition of laminin and collagen subtypes (2008)
Mira Tulla, Matti Lahti, J. Santeri Puranen, Anna-Maria Brandt, Jarmo Käpylä, Anna Domogatskaya, Tiina A.Salminen, Karl Tryggvason, Mark S.Johnson, Jyrki Heino
Experimental Cell Research
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A1 Journal article (refereed)
Functional Classification of Amino Acid Decarboxylases from the Alanine Racemase Structural Family by Phylogenetic Studies (2007)
Kidron H, Repo S, Johnson MS, Salminen TA
Molecular Biology and Evolution
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A1 Journal article (refereed)
Binding properties of HABA-type azo derivatives to avidin and avidin-related protein 4 (2006)
Susanna Repo, Tiina A.Paldanius, Vesa P. Hytönen, Thomas K. M. Nyholm, Katrin K. Halling, Juhani Huuskonen, Olli T. Pentikäinen, Kari Rissanen, J. Peter Slotte, Tomi T. Airenne, Tiina A. Salminen, Markku S .Kulomaa, Mark S.Johnson
Chemistry and Biology
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A1 Journal article (refereed)
Controlling quaternary structure assembly: Subunit interface engineering and crystal structure of dual chain avidin (2006)
Vesa P.Hytönen, JarnoHörhä, Tomi T.Airenne, Einari A.Niskanen, Kaisa J.Helttunen, Mark S.Johnson, Tiina A.Salminen, Markku S.Kulomaa, Henri R.Nordlund
Journal of Molecular Biology
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A1 Journal article (refereed)
Inhibition of DNA binding by differential sumoylation of heat shock factors (2006)
Anckar J, Hietakangas V, Denessiouk K, Thiele DJ, Johnson MS, Sistonen L
Molecular and Cellular Biology
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A1 Journal article (refereed)
Avidin related protein 2 shows unique structural and functional features among the avidin protein family (2005)
Vesa P Hytönen, Juha AE Määttä, Heidi Kidron, Katrin K Halling, Jarno Hörhä, Tuomas Kulomaa, Thomas KM Nyholm, Mark S Johnson, Tiina A Salminen, Markku S Kulomaa and Tomi T Airenne
BMC Biotechnology
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A1 Journal article (refereed)
Crystal structure of the human vascular adhesion protein-1: Unique structural features with functional implications (2005)
Airenne TT, Nymalm Y, Kidron H, Smith DJ, Pihlavisto M, Salmi M, Jalkanen S, Johnson MS, Salminen TA
Protein Science
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A1 Journal article (refereed)
Rapid turnover of c-FLIPshort is determined by its unique C-terminal tail (2005)
Poukkula, Kaunisto, Hietakangas, Denessiouk, Katajamäki, Johnson, Sistonen, Eriksson
Journal of Biological Chemistry
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A1 Journal article (refereed)
Efficient production of active chicken avidin using a bacterial signal peptide in Escherichia coli (2004)
Hytönen VR, Laitinen OH, Airenne TT, Kidron H, Meltola NJ, Porkka EJ, Hörhä J, Paldanius T, Määttä JAE, Nordlund HR, Johnson MS, Salminen TA, Airenne KJ, Ylä-Herttuala S, Kulomaa MS
Biochemical Journal
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A1 Journal article (refereed)
Jararhagin-derived RKKH peptides induce structural changes in alpha I-1 domain of human integrin alpha(1)beta(1) (2004)
Nymalm Y, Puranen JS, Nyholm TKM, Käpylä J, Kidron H, Pentikäinen OT, Airenne TT, Heino J, Slotte JP, Johnson MS, Salminen TA
Journal of Biological Chemistry
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A1 Journal article (refereed)
Crystallization and preliminary X-ray analysis of the human vascular adhesion protein-1 (2003)
Nymalm Y, Kidron H, Söderholm A, Viitanen L, Kaukonen K, Pihlavisto M, Smith D, Veromaa T, Airenne TT, Johnson MS, Salminen TA
Acta Crystallographica Section D: Biological Crystallography
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A1 Journal article (refereed)
Chloroethylclonidine and 2-aminoethyl methanethiosulfonate recognize two different conformations of the human alpha(2A)-adrenergic receptor (1999)
Anne Marjamäki, Heini Frang, Marjo Pihlavisto, Anna-Marja Hoffrén, Tiina Salminen, Mark S. Johnson, Jaana Kallio, Jonathan A. Javitch, Mika Scheinin
Journal of Biological Chemistry
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A1 Journal article (refereed)
Production, crystallization and preliminary X-ray analysis of the human integrin alpha(1) I domain (1999)
T. A. Salminen, Y. Nymalm, J. Kankare, J. Käpylä, J. Heino and M. S. Johnson
Acta Crystallographica Section D: Biological Crystallography
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Last updated on 2019-10-05 at 08:08