One Dimensional DNA Tiles Self Assembly Model Simulation

A1 Journal article (refereed)


Internal Authors/Editors


Publication Details

List of Authors: Alexandru Amarioarei, Gefry Barad, Elena Czeizler, Eugen Czeizler, Ana-Maria Dobre, Corina Itcus, Andrei Paun, Mihaela Paun, Romica Trandafir, Iris Tusa
Publisher: OLD CITY PUBLISHING INC
Publication year: 2018
Journal: International Journal of Unconventional Computing
Journal acronym: INT J UNCONV COMPUT
Volume number: 13
Issue number: 4/5
Start page: 399
End page: 415
Number of pages: 17
ISSN: 1548-7199
eISSN: 1548-7202


Abstract

The TAM (Model Tile Assembly Model) is a mathematical paradigm for modeling DNA self-assembling according to various given shapes, using DNA-tiles (rectangular shape) with sticky ends on each of the four edges that bound together on various shapes desired by the researcher. Although there are various models in the literature, the focus in this manuscript is on a rule based model, specifically the authors present an overview of the one-dimensional hierarchical self-assembly model of DNA tiles. The authors also present the evolution of number of tiles in partial assemblies, the average assembly size and of the number of partial assemblies of sizes 2 through 10 over the total running time. All simulations were run using the NFSim simulator on a preset period of time.


Keywords

computational modeling, DNA self assembly, Tile assembly model

Last updated on 2019-16-12 at 03:26

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